[∞] - Denotes an item that, even if used constantly, will still have seemingly endless stock.
[~] - Denotes an item of a large number that, if used constantly, will eventually run out.
[#x] - Denotes a specific number of that item; totals may be intentional or accidental.

❂ Puzzles
~ ► 3x3 Rubik's Cube [∞]
~ ► 5x5 Professor's Cube [x256]
~ ► 6x6 V-Cube [x128]
~ ► 7x7 V-Cube [x128]
~ ► 9x9 Rubik's Cube [x64]
~ ► 11x11 Rubik's Cube [x32]
~ ► 13x13 Rubik's Cube [x16]
~ ► 3x3 Metal Gear Cube [x16] (Ref: Here!)
~ ► 15x15 Rubik's Cube [x8]
~ ► 3x3 Void Cube [x8] (Ref: Here!)
~ ► 17x17 Rubik's Cube "Over The Top" [x3] [+1->Prototyped]
~ ► Megaminx Duodecahedron [x4] (Ref: Here!)
~ ► Gigaminx Duodecahedron [x2] (Ref: Here!)
~ ► Teraminx Duodecahedron [x1] (Ref: Here!)
~ ► Sudoku and other Puzzle Books [~]
~ ► Pocket Puzzles [4x of each; 64x total] (Ref: Here!)
~ ► Metal Gordian's Knot (Ref: Here!)
~ ► 36 Cube [x1] (Ref: Here!)
~ ► Krypt [x1] [Unsolved] (Ref: Here!)
~ ► Kendama [x4] (Ref: Here!)
~ ► Wooden Trick Boxes (Ref: Here!)
~ ► "Chinese" Finger Traps [x13]
~ ► Ripped Finger Traps [x3]
~ ► Sliding Picture Puzzles [~] (Ref: Here!)
~ ► Tangram Puzzles [~] (Ref: Here!)
~ ► Disassembly Puzzles [x8] (Ref: Here!)
~ ► Burr Puzzles [x4] (Ref: Here!)
~ ► Bedlam Cube [x4] (Ref: Here!)
~ ► Double Dovetail Puzzle [Unsolved] [x1] (Ref: Here!)
~ ► Impossible Bottles (4x Rubik's Cubes, 2x Padlocks, 2x Ships) (Ref: Here!)
~ ► Isis [x1] (Ref: Here!)
~ ► Ramisis [x1] (Ref: Here!)
~ ► Copernisis [x1] (Ref: Here!)
~ ► Tessarisis [x1] (Ref: Here!)
~ ► Cryptex [x1] (Ref: Here!)

❂ Nonfunctional? Machine Junk (Many courtesy of random names.)
~ ► Electric Engine [~]
~ ► Gears [∞]
~ ► Atomic-Code Mechanism [1x]
~ ► Cryptographic Sensor Analyzer [1x]
~ ► Spatial Teleporter [2x]
~ ► Integrated-Compass Probe Module [1x]
~ ► Cybernetic Extensive Zone Telescope [1x]
~ ► Sensory Wide-range Zenith Mechanism [1x]
~ ► Gauss-Magnet Module [1x]
~ ► Assault-Broadcast Kit [1x]
~ ► Signal-Message Invalidator [1x]
~ ► Signalling Warp Gate Scanner-Module [1x]
~ ► Relocating Portal-Door Control Unit [1x]
~ ► Glowing Dust Tube [~]
~ ► Regenerating Network A.I. Disc [1x]
~ ► Detecting Compound-Grenade Belt [3x]
~ ► Ripping Genome-Virus (Dormant in tubes; in formerly-locked briefcase) (Ref: Here!)
~ ► Thread Megamutillator (Broken?) [1x]
~ ► Misc. Unidentified Machine Pieces [∞]

❂ Weapons / Miscellaneous
~ ► Stillettokind [x4] (Ref: Here!)
~ ► Hardened Honeycombs [∞]
~ ► Jar of Honey [∞]
~ ► Laptop (Functional) [x1]
~ ► Computer (Functional) [x2]
~ ► Computer (Broken) [x5]
~ ► Alternian "Myst" Games [~]
~ ► Alternian "Zork" Games [~]
~ ► Alternian "Professor Layton" Games [~]
~ ► Portable Hammock [x1]
~ ► Recouperacoon [x1]
~ ► Plastic Ziploc-style Bags [~]
~ ► Several Alternian Knowledge Books [~]
~ ► Old "Rebellion" Fairy Tale Book [x1]
~ ► Bag of Worthless Foreign Currency [x5]
~ ► Skulls (Many varieties of beasts, many sizes, some trolls) [~]
~ ► Pumpkin [x0]
~ ► 3x3 Kaprao (Rubik's) Cube [x1] (Not to be alchemized ever, must be kept safe)

❂ Clothing [In general]
~ ► Daily Clothing (Well-worn black pants, Long-sleeve green undershirt, black shirt /w symbol) [~]
~ ► Gloves (Leather, Cloth, Rubber, all well-used) [~]
~ ► Hair Clips (Green) [~]
~ ► Green sunglasses [3x]
~ ► Broken/Cracked green sunglasses [1x]
~ ► 4-Ring Puzzle Ring [x4] (Ref: Here!)
~ ► 4-Ring Puzzle Bracelets [x2]
~ ► Various fashionable and un-fashionable feminine clothing [~]

❂ Clothing [Unique items looted from sealed/rusted ruins rooms]
Note: Everything in and around her hive is really lacking in color, so when she found these she couldn't help but keep them.
~ ► "Gemini Rising"
~ ► "Africa Print"
~ ► "Jellin'"
~ ► "Military Hoodie"
...
~ ► "Majora's Mask"